rs245256817 SNP Detail

Summary

• ID
  rs245256817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75465978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATAATG GGCTCTCATT
  TTAGAGGTAT ATAGTATCAC ACAATAATAG TTCATTCTCA TTGTGTGTAT ACTCTTTTGA
  ATGCTAGTAA TACATACGGG TGGAATTATG TTGTAATACT TGTTATGTTA GGTAGTCAAT
  CCTACCTTTG CACCTATGAC AGATTACAGC CTTTTGGGTT GGAAAAGTAC TAAAATTCTA
  Y
  GTGCTTAGTT CATTTTTTTG TTGTGAAATA GTGTCCCAGA TTATATGCCT GTTAGTCATG
  TAGCATATTG CAGCATACTC TGCTCTGAAA TGGCTTTCTT GTGACAGTTG ACTATTCCAT
  AGGGTGCCAG AATACTTGAG ATTGTTTAAA GAGGGGTCAA TAAGATCCAG AAATCACCTT
  CTATTTTCTT CTTTTGTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358480693	MGP_WTSI_3_75362593	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245256817					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358480693	MGP_WTSI_3_75362593	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75465978 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13269	CpG island 13269			913 bp distal
Pdcd10	programmed cell death 10			1819 bp upstream
Rr578348	regulatory region 578348			1871 bp distal
Rr578349	regulatory region 578349			1114 bp distal
Rr578350	regulatory region 578350			1813 bp distal
Rr578351	regulatory region 578351			within coordinates
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1			Intron
				Noncoding-Transcript-Variant
Tssr29563	transcription start site region 29563			1150 bp downstream
Tssr29564	transcription start site region 29564			1110 bp downstream
Tssr29565	transcription start site region 29565			1084 bp downstream
Tssr29566	transcription start site region 29566			1066 bp downstream
Tssr33586	transcription start site region 33586			1800 bp upstream
Tssr33587	transcription start site region 33587			1752 bp upstream
Tssr33588	transcription start site region 33588			1732 bp upstream