rs245252431 SNP Detail

Summary

• ID
  rs245252431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82961145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCTTGT CCCAGTTGTA
  CCAGGCCACA TTCTACCTCA CTGATCATTG CTCAACAGGC AAGGTACACT AATTGAAGGA
  GATTGAAAGG ATTTGTATTA CTGAATGAAA AAAAAACAGC TTTGTTAATG AAAAAACGGC
  TTTCCTTAAA ATCTGCACGA TTGTTTTCAC ACATACAAAC GCAGCATTCA TATTTATATT
  Y
  GTAAATAATT TGTCATGTTT GCTTAAAGAA AGTGTCCTCT GCACACTTAT GAAGAGCCAT
  AGTGACCTCT ACTGTCCAGA AAAGGCAGCT CGCAAGGTTA GCCAGAGCAG GTTTTTGCTT
  ACTTTTAAAG ACACGTACAT CTTATTCTTT TCGTTTGTTT TGGTTTTATT CTCTGTGTAG
  TTCTGGCCCT GGCTATCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358677260	MGP_WTSI_3_82857760	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245252431					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358677260	MGP_WTSI_3_82857760	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82961145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13295	CpG island 13295	1207 bp proximal
Plrg1	pleiotropic regulator 1	1700 bp upstream
Rr397732	regulatory region 397732	1411 bp upstream
Rr578826	regulatory region 578826	within coordinates
Rr578827	regulatory region 578827	59 bp proximal
Rr578828	regulatory region 578828	1194 bp proximal
Rr578829	regulatory region 578829	1603 bp proximal
Rr578830	regulatory region 578830	1728 bp proximal
Tssr29713	transcription start site region 29713	1678 bp upstream
Tssr29714	transcription start site region 29714	1737 bp upstream
Tssr29715	transcription start site region 29715	1756 bp upstream