rs245206000 SNP Detail

Summary

• ID
  rs245206000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13437980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCATCG TAGAGTCCTG
  GCTGAGCGAT GGAGCTGGGG AAGCCGGTGT GTGGTTGCTA GCTTCTGAGA GGGAAGCTCT
  GACCAGTCCA AGACCTCGTC TGCCAAAGCA GGTTCAGAGT CTTGGCAGGT TTCTGGATTA
  AGTGCAAGCA CGTGTTCCTA CGATCTAGTT CCTTTTTTTG TTGGCGTCAG ACCTGCCCAA
  Y
  GAGTAGCTTA CACTCAACAA GGAGTAATGA CCTCTCAAAT CTCAGGTTAG CTTGTCTGTG
  GGAAAAAAAA TAATAATAAA GTGAAGACCA GGGCTGATGG CTCAGCGGTT AAGAGCACTG
  ACTGCTCTTC CAGAGGCCCT GAGTTCAAAT CCCAGCAACC ACATGGTGGC TCACAACCAT
  CTGTAATGAG ATCTGACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322506483	CHEV_8_13387980	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245206000					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13437980 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	Intron
Tssr76399	transcription start site region 76399	1328 bp downstream
Tssr80440	transcription start site region 80440	486 bp upstream
Tssr80441	transcription start site region 80441	818 bp downstream
Tssr80442	transcription start site region 80442	1713 bp downstream
Tssr80443	transcription start site region 80443	1879 bp downstream