rs245135253 SNP Detail

Summary

• ID
  rs245135253
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104544920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACACAAA ATTAAACAAA
  TAATCTTAGC GGTAGGGAGA CAGAGGCGGG TTGATTTTTT TTTTTTTTTC ATGTTTGCTC
  TCTTAGTTCG AAGCCAGCCT GATCTACATG ATGAGTTCCA GGCCAGGTGG AGCTATACAC
  ACACACGAGG CTATCTCAAA AAAAAAAAAA AAAAAAAAAA AAAAAAACAA GAAATCAAAA
  M
  CAACCAACCA AATACCCATC TCGTAATAAT AAAAATATCA AGGGTCCTGG CCATCAAGAG
  TACTCACTAG TTTACCACTT CAAGACACTT TGGAATCTGG GCTTGGTGAA GAACCGAAAA
  TGGCTCTTGT GACACCAGGC TCTGTGGCTT TGACTTTAAA TGTTGGCGAC TTCCTAGCCT
  GGTGACTTCT GCCAGTTAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359092808	MGP_WTSI_3_104441527	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245135253					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359092808	MGP_WTSI_3_104441527	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104544920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	357 bp proximal
Gm65697	predicted gene, 65697	within coordinates
Rr367518	regulatory region 367518	686 bp upstream
Rr582556	regulatory region 582556	within coordinates
Rr582557	regulatory region 582557	868 bp proximal
Rr582558	regulatory region 582558	963 bp proximal
Rr582559	regulatory region 582559	1075 bp proximal
Rr582560	regulatory region 582560	1610 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	1064 bp upstream
Tssr31045	transcription start site region 31045	1054 bp upstream
Tssr34883	transcription start site region 34883	43 bp upstream
Tssr34884	transcription start site region 34884	825 bp downstream
Tssr34885	transcription start site region 34885	928 bp downstream