rs245096794 SNP Detail

Summary

• ID
  rs245096794
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115013746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAATTA TGATAATCTA
  TATGAAGTAA CTGGACAGCT CACAATTTCT CATATGCCCA TGATCCATAC TTTCCCATTT
  GTTAGAGAAA ATCGGTAGGA TGTAGAAGAA ATTCAAGAAA CACCAGGTGA ATTTTAACTG
  GAAGAAAGAC CTGGCCAGGA GCTAGACCCA GGATGCCCTA CTGTACAGTG ACTGAGACTC
  C
  GTACTCTGGA GTAACAAGCC TCAATCCTAA CTAGATTCCT GTTCAATGTG CTGACCTGAA
  TAAATGTGCT ACCTGCCTGG GCCCTACACC CAGTCCATCA ACTTCCTGAA GCCCACGGAT
  CATTCCGTAT TTTCTCCTTA TCTTTCGATG GGATTTTCAA AGTTAGCTTC CAATTAGTCA
  CCTGGGATGT TTTACACACT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369744308	MGP_WTSI_6_114986803	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245096794					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369744308	MGP_WTSI_6_114986803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115013746 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17868	CpG island 17868			542 bp proximal
Rr399845	regulatory region 399845			1014 bp upstream
Rr636913	regulatory region 636913			1081 bp proximal
Tamm41	TAM41 mitochondrial translocator assembly and maintenance homolog			Intron
				Noncoding-Transcript-Variant
Tssr62499	transcription start site region 62499			1039 bp downstream