rs245090443 SNP Detail

Summary

• ID
  rs245090443
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102418756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGACTTGTT TTCCATATAC
  CTCTAATTGA TAAGATGGTA GGAAGTCCAA ATACAAAACT GCTTTCAGTA ATAGATTAGG
  AGAGATGTGG GGTTCTGGAA ATTGAGCTCA GCTAGTGAAG TGCTGGCCAC GTAAGCATGA
  GGACCCAGGT TTGGTCTTTA GCACGTATGT AAAGAGCTGG GCATGATGGT CAGGGGGAGT
  W
  GGAGACAAGT GGATCACGGA GATTGTGGAT GGCCAAGCTT AATCAACTTG GTGAGTGTCA
  GGCCAAGCAT AGACACAAAC AAACAAACAA ACAAACAAAC AGCCAGGACA GACAGACAAG
  CAAACAAAGA TAGAAAATAT CTGAGAAATG ACATTCAAGC TGCTCTGATA TCCATACACA
  TGAGATTCAT AAGCATGTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439068	CHEV_2_102428568	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245090443					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102418756 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	within coordinates
Rr561706	regulatory region 561706	1548 bp proximal
Rr561707	regulatory region 561707	1780 bp proximal