rs245084770 SNP Detail

Summary

• ID
  rs245084770
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139301999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGTCTGC AGAGGGCGGG CCCTGGAGGC GTGGTCTGTG
  CCTGCAGAGG GCGGGGCTCG CCGCAGAGGG GGCAGCGCCG GCTGAGAGTC CTCTGCGAGC
  G
  GCTGCTGCGG CCGGTCCACA GCAGCTCTGA CAGTCGCGGC GCAGGCACCG GACCCCTCAC
  CAGCCCCACG CAGCCACCGC GACCTCCAGC TCGTCCCAC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321382467	CHEV_4_139130603	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245084770					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139301999 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15171	CpG island 15171			within coordinates
Iffo2	intermediate filament family orphan 2			Intron
				mRNA-UTR
Rr603244	regulatory region 603244			within coordinates
Rr603245	regulatory region 603245			136 bp distal
Rr603246	regulatory region 603246			43 bp distal
Tssr39955	transcription start site region 39955			within coordinates
Tssr39956	transcription start site region 39956			9 bp upstream