rs245028820 SNP Detail

Summary

• ID
  rs245028820
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152634941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTTAATT ACAGGTAAGG
  GTATGTTTAC ATTCCCCAGG GCTAGCTACT GACAGGTTTT ATTTCTGAGG GAAAAAAAAA
  AATGCTGCTG CAGTTTGACT AAATCCACAG GTCTTTTTTT TTTTTTCCAC TCTTAAAATT
  CTGTGTGGCC GAAAGGAACC CATCACTCAA AGATCTTTCA AAGGTAACCT GGAAAACCTT
  T
  ATTTTCCAGA GTCTGAATGC AGTTAGAGAA CCCAAAGTTC AGACCCGGAA GCCTAAACAA
  AAGAAGACAT GGGAGGTCGA TACCTTTGTG AGGCTCAAAA GAGGGCGGGT GGCCTCGGGG
  CATGATGATG GTGACATAAT CGGCCAATTA AAACCTTGAG ACAAAGTCTG AGCCATACAG
  GTGCAGAGCC CAGGATGCTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321029246	CHEV_3_152592268	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245028820					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152634941 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	within coordinates
Rr587627	regulatory region 587627	400 bp distal
Rr587628	regulatory region 587628	within coordinates
Rr587629	regulatory region 587629	977 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	404 bp downstream
Tssr32428	transcription start site region 32428	740 bp upstream