rs244904180 SNP Detail

Summary

• ID
  rs244904180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116647104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCCTTAGT GCTGAAACGC CCTATTCCCT
  GGGCAGGGTG TCCAAACACA AGCATCTCCA ATGGCCTACT TTCATTCTTT TGCAATAAAA
  ATCCACAATC ATAATCTTAT CTGGAACCCA GTGCTCAGAG AGATGATCCT TGGTAGAAAT
  R
  GATGAAGAGA GGCCTGGCCT GCCACCCAGG CAAGTCAGAA GCAGCCCCTG ATAGAACCAG
  ACAGACTGCT AACTCAGCAG GGCCGCCCCC TCCCCCAGCA GCCTTTGTCC AGGTCCTGCT
  CGCCCCCTAC AGCCCAGCAG GCACAGCCCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321918467	CHEV_6_116620161	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244904180					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116647104 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	1037 bp distal
Rr637229	regulatory region 637229	960 bp distal
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	117 bp proximal
Rr637232	regulatory region 637232	1096 bp proximal
Tssr58383	transcription start site region 58383	745 bp downstream
Tssr58384	transcription start site region 58384	676 bp downstream
Tssr58385	transcription start site region 58385	1402 bp upstream
Tssr58386	transcription start site region 58386	1651 bp upstream
Tssr62604	transcription start site region 62604	1752 bp upstream
Tssr62605	transcription start site region 62605	1728 bp upstream
Tssr62606	transcription start site region 62606	1264 bp downstream