rs244903282 SNP Detail

Summary

• ID
  rs244903282
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32791649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGGGCT CTCGTGTGAA
  GAGCTGCTGC AGATCGGATG GCCTTGTTTA AGCTCAGCGT TTGCGAAGCG CCTTGCCACG
  CCATGCTGGG CGCTGCTCCC TCGCTGCCAG GCTAGGCAGG CATGGAGCTG CTGCCCGCGT
  CTCCAAGGGC AACTGCACAC ACTTCGTTGT TGAGACAGGG TCTCGGGGAT CCGAGGCTGC
  A
  CTTGTCCCGG CTCCCGAGGG CTGGGATTGC AGGCTTGCAC TGCGTCGCTG GGCTCAGGGC
  AGAATCAGGG TGCGTGGCAC CTGCAGCTGG TTCCAACCCG CAGATAGGAA GTTGCTGAGA
  AGCGCACTGA AGTGAAGGCT GTCATGGTGT TCCTAGGCAC GAGTGTAAAA AGGCTCCAGG
  TGACAGGCCC GTTAGGCACG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	LEWES/EiJ	LG/J	NOD/ShiLtJ	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357472311	MGP_WTSI_3_32636422	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	LEWES/EiJ	LG/J	NOD/ShiLtJ	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244903282					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357472311	MGP_WTSI_3_32636422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32791649 () rs orientation: forward

Symbol	Name	Function Class
Gm9859	predicted gene 9859	within coordinates
Mrpl47	mitochondrial ribosomal protein L47	745 bp upstream
Ndufb5	NADH:ubiquinone oxidoreductase subunit B5	Intron
Rr367422	regulatory region 367422	445 bp downstream
Rr575021	regulatory region 575021	419 bp distal
Rr575022	regulatory region 575022	within coordinates
Rr575023	regulatory region 575023	280 bp distal
Tssr28770	transcription start site region 28770	418 bp downstream
Tssr32937	transcription start site region 32937	723 bp upstream
Tssr32938	transcription start site region 32938	718 bp upstream