rs244853496 SNP Detail

Summary

• ID
  rs244853496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135369392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGAAAAG CTGGGCTGGC
  GGCAGTTGTC TGCAGTCCCA GCTACAGGAA GGTGGAGACA TGAAGATTTG CTGGCTGGAG
  GTCTTAGCTG AATCCAGGAG CTGTAGGTTA GGTTAGACAC CGTTTCTCAA AATCAAAGAT
  GGGGAGCCAC CTTCAGCCTC CACACACTTG TGAATGTACA CGTACAGACA GACAGCACAT
  R
  CGTGCACATG ATCTTAGATA TGTATGCTTC TGTTCTGATG ATAAATAGAT TACTTACTGA
  GCTACAGAAC TTCAAGGCCT TGAAAGAATT ACAGGCAGGA GTTACACAAC TTACAAAATG
  ACTGGCAATA CAACTGAGAA CATGATGGAG CAGAGGGCTC ACTTTCTCCC GCCTCTATTT
  TCTTTTTCTT TTCGTCGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359840541	MGP_WTSI_3_135326595	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244853496					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359840541	MGP_WTSI_3_135326595	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135369392 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	1121 bp distal
Rr585760	regulatory region 585760	1777 bp proximal
Tssr35804	transcription start site region 35804	318 bp upstream
Tssr35805	transcription start site region 35805	1451 bp downstream
Tssr35806	transcription start site region 35806	1462 bp downstream
Tssr35807	transcription start site region 35807	1482 bp downstream
Tssr35808	transcription start site region 35808	1523 bp downstream
Tssr35809	transcription start site region 35809	1560 bp downstream
Tssr35810	transcription start site region 35810	1585 bp downstream
Tssr35811	transcription start site region 35811	1652 bp downstream
Tssr35812	transcription start site region 35812	1671 bp downstream
Tssr35813	transcription start site region 35813	1712 bp downstream
Tssr35814	transcription start site region 35814	1736 bp downstream
Tssr35815	transcription start site region 35815	1767 bp downstream
Tssr35816	transcription start site region 35816	1784 bp downstream
Tssr35817	transcription start site region 35817	1854 bp downstream
Tssr35818	transcription start site region 35818	1882 bp downstream
Tssr35819	transcription start site region 35819	1914 bp downstream