rs244848434 SNP Detail

Summary

• ID
  rs244848434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132294306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGAGTCT TTACTGAGTG TGGAATCAGT
  TCCCTAGATC AGAGGCTAGC CCCCAGCACA GCTGCTCTGA GCAGCCACTT AGAATTGTGA
  CGAGAGTGGA AGAAGCTTCC ATGTGTATTT GTGTGGGAGT GGGAGTCGGA GCGGGAGTGG
  R
  TGTTTAGCTC TACGGGAGTA GGACCTTCCA CTAGCTTTGC AGAACACTTG AGCTGGCTGG
  GCCAGAAAAT ATGTCAGTCA CTTGTGCAAG GGCCCTTTCC AGTTTGTTAA GTCCATTGCA
  TTTTACCAAG AGTGTTACCC TTTTCCAAAC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334518	CHEV_4_132122910	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244848434					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132294306 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601019	regulatory region 601019	1483 bp distal
Rr601020	regulatory region 601020	316 bp proximal
Tssr39389	transcription start site region 39389	1627 bp downstream
Tssr39390	transcription start site region 39390	1327 bp upstream
Tssr39391	transcription start site region 39391	1414 bp upstream
Tssr39392	transcription start site region 39392	1502 bp upstream
Tssr39393	transcription start site region 39393	1583 bp upstream
Tssr39394	transcription start site region 39394	1610 bp upstream
Tssr39395	transcription start site region 39395	1665 bp upstream
Tssr39396	transcription start site region 39396	1818 bp upstream
Tssr43688	transcription start site region 43688	469 bp downstream
Tssr43689	transcription start site region 43689	496 bp downstream