rs244842104 SNP Detail

Summary

• ID
  rs244842104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:42951552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCCATG CCTTGGGGCT
  CCTTTGTCAT CCTACCACGT GGCTTGTGGG GAGGGAGAGG GAAGGAGGGT GGAAAGAAGG
  AGGGAAAGGA GGCAGGTCCT GAGAGTTTGC CCTGTGTCTG TAGAGGCAAG AGAATTATGG
  GTCTAGAGCA GCTAGCAGGT GGGTGCCGGA GAGGAAGCTG GCTGTGGTGG GGAAGAGATA
  Y
  TGAAGGACTA CAAACGGTGG GTGGGCTGGT AAGCTGGGTC ACTGCCCTCT GCCTGGAAGC
  CGCTGGAGTT CCCTGGGCAC CCTGTTGCTG CTGTTCTAGG TTTCTTCCTG TCCTGGGGGA
  GAGAAAGTGT GGGCTGAGGC AAAGATGGCA GACCACCCAT CTCCCTCTCA GACTGCTTTT
  AATGCCGTTT CCGAAAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361308123	MGP_WTSI_4_42964424	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244842104					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361308123	MGP_WTSI_4_42964424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:42951552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb5	DnaJ heat shock protein family (Hsp40) member B5			Intron
				Noncoding-Transcript-Variant
Gm69502	predicted gene, 69502			1935 bp downstream
Rr398224	regulatory region 398224			1632 bp downstream
Rr590884	regulatory region 590884			1675 bp distal
Rr590885	regulatory region 590885			1146 bp distal
Rr590886	regulatory region 590886			within coordinates
Rr590887	regulatory region 590887			1052 bp proximal
Tssr1154	transcription start site region 1154			1273 bp upstream
Tssr36908	transcription start site region 36908			1629 bp downstream
Tssr36909	transcription start site region 36909			1107 bp downstream
Tssr36910	transcription start site region 36910			1077 bp downstream
Tssr36911	transcription start site region 36911			1060 bp downstream
Tssr36912	transcription start site region 36912			1220 bp upstream
Tssr36913	transcription start site region 36913			1242 bp upstream
Tssr36914	transcription start site region 36914			1256 bp upstream