rs244828562 SNP Detail

Summary

• ID
  rs244828562
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:10009201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCCCTAA GTCTATTTTA
  TGATTGGGCA TGATTATCTC TAGTATATTG CTACACACAT TTTCTGATCA AAATCAATTA
  AATGTACTAA TGATTTGAAA AACTACTAAG AGGCTAAATC AGAAGGGTTG TTTGAGCTCA
  GAAATACAAT GTCATGTTAG ACTATACATA ATAAGACTTT AATAATAAGT TTAATAATAA
  S
  TCTAATAAGA CTTTCTGGAA GTTTCATACA GTTGCATTTA TTGATTATGC TATGTACTCT
  TATAAGATAG TTGAAGGCTT GAGGACGCAC ATGTGGATTG GAAACATGCC TTCATGGTCA
  TAGAATATGA AGGATCATTG GCAAGATTAT TAGACCTGTA AAAATCAATG AAAAGAGAAT
  GCAAGTACTA AAAATCATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370615432	MGP_WTSI_7_10860623	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	C	C	G	G	G	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244828562					SNP	G	G	G	C	G	C	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G	C	C	G	G	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370615432	MGP_WTSI_7_10860623	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:10009201 () rs orientation: forward

Symbol	Name	Function Class
Gm71895	predicted gene, 71895	within coordinates
Vmn1r66	vomeronasal 1 receptor 66	mRNA-UTR