rs244693815 SNP Detail

Summary

• ID
  rs244693815
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCACTAAG TTAATAAATG
  GCAGGATCCA GACTGACACC CCTGATCCCT GTTGAAGTTA CATCCCTCTG AACGACTGGT
  CAACTGCAGG GCAGCCTGCT TGAAGAGGGT TACCTGTCCC TAGGACACTG AACAGGCATT
  TGTTTTTCCT AGAAGACAGT TCACCAGCTG GAGAGGAGTC GTCTCCCGTA GTTTCTGTTT
  S
  GTTGCTTTTG GTTTTTGTTT GGTTTTGGTT TTTTAATTAT CTGGCATCCA GGACTTGATG
  GAAAATAACC AGAGCTAAGC TCACCGGTTC ATCTGCCCAT TAGGAAGTTC TAGGGATGGG
  AGAAAGAACA CGGCGTCAAT TAACAAATCC ACAAAGCTAA GACCTTGAAG CATTCTGTGA
  ACTTGTAAAC GCGCTCAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791561	MGP_WTSI_6_117122749	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244693815					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791561	MGP_WTSI_6_117122749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149692 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	63 bp distal
Rr637289	regulatory region 637289	1135 bp proximal
Rr637290	regulatory region 637290	1320 bp proximal
Rr637291	regulatory region 637291	1371 bp proximal
Tssr58392	transcription start site region 58392	1244 bp downstream
Tssr58393	transcription start site region 58393	1225 bp downstream
Tssr58394	transcription start site region 58394	1185 bp downstream
Tssr58395	transcription start site region 58395	761 bp upstream
Tssr58396	transcription start site region 58396	777 bp upstream
Tssr58397	transcription start site region 58397	815 bp upstream
Tssr58398	transcription start site region 58398	841 bp upstream
Tssr58399	transcription start site region 58399	863 bp upstream
Tssr58400	transcription start site region 58400	891 bp upstream
Tssr58401	transcription start site region 58401	927 bp upstream
Tssr58402	transcription start site region 58402	958 bp upstream
Tssr58403	transcription start site region 58403	976 bp upstream
Tssr58404	transcription start site region 58404	995 bp upstream
Tssr58405	transcription start site region 58405	1037 bp upstream
Tssr58406	transcription start site region 58406	1067 bp upstream
Tssr58407	transcription start site region 58407	1098 bp upstream
Tssr58408	transcription start site region 58408	1165 bp upstream
Tssr58409	transcription start site region 58409	1187 bp upstream
Tssr58410	transcription start site region 58410	1209 bp upstream
Tssr58411	transcription start site region 58411	1225 bp upstream
Tssr58412	transcription start site region 58412	1252 bp upstream
Tssr58413	transcription start site region 58413	1265 bp upstream
Tssr58414	transcription start site region 58414	1298 bp upstream
Tssr58415	transcription start site region 58415	1313 bp upstream
Tssr58416	transcription start site region 58416	1328 bp upstream
Tssr58417	transcription start site region 58417	1382 bp upstream
Tssr58418	transcription start site region 58418	1415 bp upstream
Tssr58419	transcription start site region 58419	1434 bp upstream
Tssr58420	transcription start site region 58420	1461 bp upstream
Tssr58421	transcription start site region 58421	1480 bp upstream
Tssr58422	transcription start site region 58422	1506 bp upstream
Tssr58423	transcription start site region 58423	1514 bp upstream
Tssr58424	transcription start site region 58424	1576 bp upstream
Tssr58425	transcription start site region 58425	1621 bp upstream
Tssr58426	transcription start site region 58426	1643 bp upstream
Tssr58427	transcription start site region 58427	1670 bp upstream
Tssr58428	transcription start site region 58428	1685 bp upstream
Tssr58429	transcription start site region 58429	1750 bp upstream
Tssr58430	transcription start site region 58430	1795 bp upstream
Tssr58431	transcription start site region 58431	1891 bp upstream
Tssr58432	transcription start site region 58432	1964 bp upstream
Tssr58433	transcription start site region 58433	2000 bp upstream
Tssr62617	transcription start site region 62617	825 bp downstream
Tssr62618	transcription start site region 62618	847 bp downstream
Tssr62619	transcription start site region 62619	883 bp downstream
Tssr62620	transcription start site region 62620	926 bp downstream
Tssr62621	transcription start site region 62621	992 bp downstream
Tssr62622	transcription start site region 62622	1544 bp downstream
Tssr62623	transcription start site region 62623	1562 bp downstream
Tssr62624	transcription start site region 62624	1677 bp downstream
Tssr62625	transcription start site region 62625	1828 bp downstream
Tssr62626	transcription start site region 62626	1924 bp downstream
Tssr62627	transcription start site region 62627	1955 bp downstream