rs244686224 SNP Detail

Summary

• ID
  rs244686224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107834956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTCTGTA CCACCTGCTC
  TGACCCAGCT CCTGCTTTGT TTCAGGAGAT TAGTTACTTC CAGTTCCCTG GAGAACTCTT
  GATGCGGATG CTGAAGATGC TGATCCTACC ACTGGTGGTC TCCAGGTGAG AGGAGGGGTG
  GGAGGGCACA GAGCTCTGAC TGGTGGTCTC CAGGTGAGAG GAGGGGTGGA GGAGGGGCAC
  R
  GGGCTCTGAT TGGTGGTCTC CAGGTGAGAG GAGGGGTGGA GGAGGGGCAC GGGGCTCTGA
  TTGGTGGTCT CCAGGTGAGA GGAGGGGTGG GAGGGCACAG AGCTCTGACT GGTGCTCTCC
  AGGTGAGAGG AAGGATGGGG AAAGGCATGG GGCTCTGCCC CAAGGCCAGC CTCTCTGGCT
  GTCGGCTGGT CCCTTCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss362772737	MGP_WTSI_4_107650364	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs244686224					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362772737	MGP_WTSI_4_107650364	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107834956 () rs orientation: forward

Symbol	Name	Function Class
Rr597103	regulatory region 597103	1709 bp proximal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7	Intron