rs244621048 SNP Detail

Summary

• ID
  rs244621048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88823099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAACAAG GGAAAAGATC
  GTGGAGTGAC AACCGAAGCC CCCAAGTCCT CACCCACGGA CGCCCCCGCC CCACACACAC
  ACGTTCTCTC CCAGTTTCCC ACGGTCTCCC CACAGCTCTC CGCGTCCGCA GAGCCCCGCT
  GCACCAAAGG TCCTTCTGTC AAGGCGAGTG GACTTGCAGA GGTGACCTTC AGTCAGGTGG
  R
  CCGCCCGCCT CTCCCCGCGG ACAAGGGAGA GGGACGCGCG GGGGCTGTCC CAGGCTAGCC
  CACGCTCCCG TGCGCGCGGG GCTGCGCGTC GGTGGCCGGC CGAGGAGGCC CGAGCCGCCC
  GGCCTACCGC TCCCACCGCA CGCACGGCCG GCCCCGACCC TCCGCGGGCT CTGGCCGCTC
  AGCTTCACCT CCAGCGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss365796640	MGP_WTSI_5_89104265	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs244621048					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365796640	MGP_WTSI_5_89104265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88823099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16030	CpG island 16030			within coordinates
Gm71600	predicted gene, 71600			983 bp upstream
Grsf1	G-rich RNA sequence binding factor 1			Intron
				mRNA-UTR
Rr614150	regulatory region 614150			within coordinates
Rr614151	regulatory region 614151			416 bp proximal
Rr614152	regulatory region 614152			717 bp proximal
Rr614153	regulatory region 614153			778 bp proximal
Rr614154	regulatory region 614154			921 bp proximal
Rr614155	regulatory region 614155			994 bp proximal
Tssr51689	transcription start site region 51689			13 bp upstream
Tssr51690	transcription start site region 51690			302 bp downstream
Tssr51691	transcription start site region 51691			325 bp downstream
Tssr51692	transcription start site region 51692			373 bp downstream
Tssr51693	transcription start site region 51693			871 bp downstream
Tssr51694	transcription start site region 51694			895 bp downstream
Tssr51695	transcription start site region 51695			952 bp downstream
Tssr51696	transcription start site region 51696			986 bp downstream