rs244579817 SNP Detail

Summary

• ID
  rs244579817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85430482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCCGGC AAGAACAGGA
  CCTTTGAGAA CCCAGAAATA CACTTGCTAG GAATGAAACC ACAGCATGGA CCTCTCAAGG
  GATCACATCG CTGTCATCAA GGCTTAATCA GACTCAGCAG TTCCGATGTC TACACAGCCC
  ACAGTCTGGG TTCAAGCCCC ACGTGGGTGC TAGTGGTGTT CAGTGAGGAC AGCAGTGGGC
  R
  CCCTCTGTCC TCTACGCTGA TGCTATCCCT TGGGTCCTCA GGGCACCAAC CCCAGAAGGT
  GGCTCGGCGA GTGTTCACCA ACAGCCGTGA GCGCTGGCGG CAGCAGCACG TTAACGGCGC
  CTTCGCAGAG CTCAGGAAGC TGCTGCCCAC CCACCCGCCC GACCGGAAGC TGAGCAAGAA
  CGAGGTGCTG CGCCTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375404544	MGP_WTSI_8_87227752	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244579817					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375404544	MGP_WTSI_8_87227752	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85430482 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			Intron
Nfix	nuclear factor I/X			Intron
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			664 bp upstream
Rr666585	regulatory region 666585			1999 bp distal
Rr666586	regulatory region 666586			369 bp distal
Rr666587	regulatory region 666587			within coordinates
Rr666588	regulatory region 666588			733 bp proximal
Tssr78437	transcription start site region 78437			1971 bp downstream
Tssr78438	transcription start site region 78438			1943 bp downstream
Tssr78439	transcription start site region 78439			438 bp downstream
Tssr82117	transcription start site region 82117			1273 bp downstream
Tssr82118	transcription start site region 82118			1309 bp downstream
Tssr82119	transcription start site region 82119			1337 bp downstream
Tssr82120	transcription start site region 82120			1414 bp downstream
Tssr82121	transcription start site region 82121			1961 bp downstream