rs244574164 SNP Detail

Summary

• ID
  rs244574164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82937597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATTTCC TTTTTCTTTT
  TTTATTTATT TGTTTTTAGA TTTTAGAAGT AAATCAGACT GCAGCTATTT GCATACCTTT
  CTTTTTCCGT TTCAGACTTT GATAACACTT ATGGGCAAGT GTCAGAAGAC CTGAGGCGCA
  GAATTGAGAT CCTGAGGCGA AAAGTCATAG AGAAAGCGCA ACAGATTCAA GCTCTGCAGA
  R
  CAATGTCCGG GCTCAGTTGA TAGACATGAA GCGCCTGGAG GTAAGCCTGG CCCTGGCCCC
  AGTTTATCTC TGACTAAGAA AGACAGAAGA CACTAGCTGC CTGTGTAGAG TCTACTAAAT
  CTATTATCCA TTCAGAATAG AAGTGTCTCA CCCTAGAGAA GACTTAAGTC CGGAAATGCG
  AAGGAAATTC TTGAAGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676685	MGP_WTSI_3_82834212	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244574164					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676685	MGP_WTSI_3_82834212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82937597 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-NonSynonymous
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	1408 bp upstream
Tssr29661	transcription start site region 29661	1742 bp downstream
Tssr29662	transcription start site region 29662	1693 bp downstream
Tssr29663	transcription start site region 29663	1676 bp downstream
Tssr29664	transcription start site region 29664	1193 bp downstream
Tssr29665	transcription start site region 29665	1154 bp downstream
Tssr29666	transcription start site region 29666	1118 bp downstream
Tssr29667	transcription start site region 29667	1075 bp downstream
Tssr29668	transcription start site region 29668	81 bp downstream
Tssr29669	transcription start site region 29669	31 bp downstream
Tssr29670	transcription start site region 29670	within coordinates
Tssr29671	transcription start site region 29671	540 bp upstream
Tssr29672	transcription start site region 29672	643 bp upstream
Tssr29673	transcription start site region 29673	671 bp upstream
Tssr29674	transcription start site region 29674	720 bp upstream
Tssr29675	transcription start site region 29675	730 bp upstream
Tssr29676	transcription start site region 29676	740 bp upstream
Tssr29677	transcription start site region 29677	757 bp upstream
Tssr29678	transcription start site region 29678	836 bp upstream
Tssr29679	transcription start site region 29679	880 bp upstream
Tssr29680	transcription start site region 29680	903 bp upstream
Tssr29681	transcription start site region 29681	1005 bp upstream
Tssr29682	transcription start site region 29682	1028 bp upstream
Tssr29683	transcription start site region 29683	1071 bp upstream
Tssr29684	transcription start site region 29684	1096 bp upstream
Tssr29685	transcription start site region 29685	1137 bp upstream
Tssr29686	transcription start site region 29686	1203 bp upstream
Tssr29687	transcription start site region 29687	1301 bp upstream
Tssr29688	transcription start site region 29688	1325 bp upstream
Tssr29689	transcription start site region 29689	1351 bp upstream
Tssr29690	transcription start site region 29690	1381 bp upstream
Tssr29691	transcription start site region 29691	1427 bp upstream
Tssr29692	transcription start site region 29692	1443 bp upstream
Tssr29693	transcription start site region 29693	1474 bp upstream
Tssr29694	transcription start site region 29694	1507 bp upstream
Tssr29695	transcription start site region 29695	1533 bp upstream
Tssr29696	transcription start site region 29696	1546 bp upstream
Tssr29697	transcription start site region 29697	1570 bp upstream
Tssr29698	transcription start site region 29698	1707 bp upstream
Tssr29699	transcription start site region 29699	1789 bp upstream
Tssr29700	transcription start site region 29700	1802 bp upstream
Tssr29701	transcription start site region 29701	1834 bp upstream
Tssr33800	transcription start site region 33800	812 bp downstream
Tssr33801	transcription start site region 33801	1157 bp downstream
Tssr33802	transcription start site region 33802	1293 bp downstream