rs244573162 SNP Detail

Summary

• ID
  rs244573162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95042544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGGCCCG CTAAGATGCC
  CCCTCTCACA TTATTTAAAT TCTATTATGG TCTGTTTTTT TTCTTCCTTA TTTTGCTTTC
  ACATCTCAGC AGAGCACTGT TGGGACAGAT CTGCCCAACT ATCCCAGTGG GAGGAGCAAC
  TCCTGTAGAT GGTGAGGGAG GTGGGTGAGT GGGGGCGGGG CTTACAGCCA TTAACTGGAC
  Y
  TGTGTCCCTA TCAACTTAAG ACTGATAAAC CAGTTTGATC AAGGTCGAAT CACTTAAGTG
  TCAGAGTAAG GTTTCTGTCT GACTCTAAAG CCGGTACTAT TAGCCATGCG GGGGTGGGGT
  AGGGGTGGGG GTGGGGATGT AGAGACTGGT AAGGAAGAGC TGACTTTTAC TAGCACTCTG
  AAGGTGCCCA TTTGTAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358895691	MGP_WTSI_3_94939155	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244573162					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358895691	MGP_WTSI_3_94939155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95042544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13498	CpG island 13498	1178 bp distal
D3Umi10	DNA segment, Chr 3, University of Michigan 10	994 bp distal
Lysmd1	LysM, putative peptidoglycan-binding, domain containing 1	Intron
Rr367480	regulatory region 367480	1144 bp downstream
Rr580823	regulatory region 580823	1135 bp distal
Rr580824	regulatory region 580824	within coordinates
Rr580825	regulatory region 580825	517 bp proximal
Rr580826	regulatory region 580826	1116 bp proximal
Scnm1	sodium channel modifier 1	1259 bp upstream
Tssr34419	transcription start site region 34419	1320 bp upstream
Tssr34420	transcription start site region 34420	1245 bp upstream
Tssr34421	transcription start site region 34421	1216 bp upstream