rs244497162 SNP Detail

Summary

• ID
  rs244497162
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135438156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTATCAA CCGAGAATCA
  CCCTAGAGCA GTGGCTCTCA ACCCTCTTAA CGCTGCAACC CTTTAATATA CTTCCTCATG
  TTGTGGTGAT TCCCAACCAT AAAATACTTC ATTGCTACTT CATAGCTGTA ATCTTGCTAC
  TCTTATGAAT CATAATGTAA ATATCTGTGA TCCCCCCATC ACCCCCGGCC CCCCACCCCC
  G
  TTTCTCTTCT CCCTTTTGCT CTGCACTCCC CCACCCCCCA CCCCGCTCAC TCCAGGCCCA
  GCTCAATCCA GTCCATAGGT TTTTAAAATT TGTTTCTCAT TACGGATGGT TGTGAGCCAC
  CTTGTGCTTG CTGGGATTTG AACTCATGAC TTCCAGGAGA ATCATCAGTG CTCTTAACTG
  CCTAGCCATC ACACCAGCCC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss363373308	MGP_WTSI_4_135266760	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs244497162					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363373308	MGP_WTSI_4_135266760	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135438156 () rs orientation: forward

Symbol	Name	Function Class
Rr602110	regulatory region 602110	965 bp distal
Rr602111	regulatory region 602111	1798 bp distal
Rr602112	regulatory region 602112	1586 bp distal
Rr602113	regulatory region 602113	1354 bp distal
Rr602114	regulatory region 602114	1079 bp distal
Rr602115	regulatory region 602115	127 bp distal