rs244470496 SNP Detail

Summary

• ID
  rs244470496
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:95288860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCGGTTCTC TTCTGCTAGG GGTCCCCAAG
  CCTTCGAGGG AGCCGCGAGA CTCCGCTGCC CTAGCCCTAG GCAGAGTTTT CCAGCAGCGG
  GCGCCCTGCA CCCCGGGAGG GGAAACTTTC ACCGGGCCCG GAGCCCAGCT CTGCGCTCCA
  M
  CGAGCGCGGC GCGTCCCGGC TCCAGCGACG TCTCCTTAGG TCTCTCGGGA CCGCTGCTTC
  CCTCCAGGCT CTGGGGCACG AAGCAGGCAG GAGGCGACAG TGGGGGGTGG CTTACATACG
  CCCCAGCTCC AGGCTGTTCT GCTCTCCATC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323100047	CHEV_9_95307226	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244470496					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95288860 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	mRNA-UTR
Gm35915	predicted gene, 35915	654 bp upstream
Gm37805	predicted gene, 37805	597 bp upstream
Rr684785	regulatory region 684785	1223 bp distal
Rr684786	regulatory region 684786	1019 bp distal
Rr684787	regulatory region 684787	845 bp distal
Rr684788	regulatory region 684788	822 bp distal
Rr684789	regulatory region 684789	663 bp distal
Rr684790	regulatory region 684790	within coordinates
Rr684791	regulatory region 684791	559 bp proximal
Tssr86547	transcription start site region 86547	618 bp upstream
Tssr90904	transcription start site region 90904	301 bp downstream
Tssr90905	transcription start site region 90905	377 bp downstream
Tssr90906	transcription start site region 90906	394 bp downstream
Tssr90907	transcription start site region 90907	420 bp downstream
Tssr90908	transcription start site region 90908	433 bp downstream
Tssr90909	transcription start site region 90909	474 bp downstream
Tssr90910	transcription start site region 90910	496 bp downstream
Tssr90911	transcription start site region 90911	543 bp downstream
Tssr90912	transcription start site region 90912	960 bp downstream