rs244444779 SNP Detail

Summary

• ID
  rs244444779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132613034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAAAACT CCAGATAGAC
  AGCATAAACT GCTCCTTTGC TTTCTCTTTT AATTATTTAT TTTTATGCTC ATTGGTCTTT
  TGCCTGTACC TGTGAGGGTG ACAGAGCCCC TGGACCTGGA GTTACAGAGA GCTGTGAGCT
  GCCATGTGAA TGCTGGGAAT TGAACCTGTG TCCTCTGGAA GAGCAGCCAG TGTTCTTAAC
  Y
  GCAGAGTCAT TTCTCCAGCC CCAAACTATG CCTTTTCAAG GATGAAAAAC TCAAGTACCA
  GGTAATTGAT GAAGAGGTAT ATTCTCCCAT CAGAGAGATC AGGGACACTC AGGTGGAAGC
  AGACTGCCAC TGCAAACCCC CAAATACCTG CTTTAGGGCA GATCTTGGGT TTGGCCACTG
  GTCATATGGT ATAAGCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321337131	CHEV_4_132441638	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244444779					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132613034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14976	CpG island 14976	732 bp distal
Gm13033	predicted gene 13033	within coordinates
Gm70413	predicted gene, 70413	within coordinates
Rr601102	regulatory region 601102	1182 bp distal
Rr601103	regulatory region 601103	410 bp distal
Rr601104	regulatory region 601104	1937 bp proximal
Stx12	syntaxin 12	1265 bp upstream
Tssr39425	transcription start site region 39425	1741 bp downstream
Tssr39426	transcription start site region 39426	1171 bp downstream
Tssr43723	transcription start site region 43723	1222 bp upstream
Tssr43724	transcription start site region 43724	1200 bp upstream
Tssr43725	transcription start site region 43725	933 bp upstream