rs244349387 SNP Detail

Summary

• ID
  rs244349387
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:177483007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATTATAT AGTTAATGCA
  TTTATTAGAA TGACTCACAG GATGCCATTC AACCAGTCCA AAAAAGGCTG TCTACACATT
  TAAAATTTCC AATAGTGGTT CAGTTCATGT GGCTTGACAT CTCAACTAGT CTTCATTACA
  TACCTTAATT TTCAAAATTA TGCACTACTG CCAAAAAATA AACAAAAAAA CAAACAAACA
  M
  ACACACACAA TAACAACAAC AACAACAAAA AGTTGTTAGA AAGAGGTAGG GCATTAAGGC
  AAAGAGATAG AGCTACCATC TTCAATGTCC TTTATATATG TAGGCTGTCA CCATAAGCTG
  TTGCCTAGAT CCAAGTTGGA TCTTATCACC CCAAAAGACC CAGATTAAAA ATACTTTTCC
  CAGATTGAAA ACTACAATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss356702821	MGP_WTSI_2_177575919	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs244349387					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356702821	MGP_WTSI_2_177575919	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177483007 () rs orientation: forward

Symbol	Name	Function Class
Gm14325	predicted gene 14325	878 bp upstream
Rr374348	regulatory region 374348	1846 bp upstream
Rr572329	regulatory region 572329	907 bp distal
Rr572330	regulatory region 572330	470 bp distal
Tssr28052	transcription start site region 28052	860 bp upstream