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rs244339956 SNP Detail
Summary
  • ID
    rs244339956
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:110249904 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACCACCACT GACTTTACCC
TGTAGGTCTC CATTATGGCC ATTTAATAAG TCCCAGATAT TGGTGGACAG GACAGACTTG
GACTAGACTG ATGCAGGCAA TATCATGTGG CCCCTCTGTG CTTTGTTCCC TAACCTGTAG
AAGAGAGATG TTCATGAGTT CTCTGTTGCT TCTTTAGAAT CCTGCTACCA ATATCCCACT
Y
CAGTTCAGGA TTAAAGAGAC AGAGTGTACT TCCACCCAGG AGAGACAGCC TAAAGACTGC
GACTTCCTGG AGGATGGGGT GAGTCACCTT CTTCCAGATC CTAGACTGCC TCCTGGAGGA
AGAGAAGTCC CCTCCTCTCT TGCCTTCTTT CATGTCACCT GACCACTTCA CCAGCAGTTG
TAATGTTGAA GCCTTTTTCA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss378902761 MGP_WTSI_9_110323340 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C T C C C T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244339956 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C T C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss378902761 MGP_WTSI_9_110323340 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:110249904 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ngp neutrophilic granule protein Coding-Synonymous
Tssr3020 transcription start site region 3020 49 bp upstream
Tssr3021 transcription start site region 3021 453 bp downstream
Tssr3022 transcription start site region 3022 896 bp downstream
Tssr3023 transcription start site region 3023 1532 bp downstream
Tssr3024 transcription start site region 3024 1555 bp downstream
Tssr3025 transcription start site region 3025 1634 bp downstream
Tssr3026 transcription start site region 3026 1690 bp downstream
Tssr3027 transcription start site region 3027 1773 bp downstream
Tssr3028 transcription start site region 3028 1851 bp downstream
Tssr3029 transcription start site region 3029 1866 bp downstream
Tssr3030 transcription start site region 3030 1887 bp downstream
Tssr87360 transcription start site region 87360 1027 bp downstream
Tssr87361 transcription start site region 87361 974 bp downstream
Tssr87362 transcription start site region 87362 719 bp downstream
Tssr87363 transcription start site region 87363 3 bp downstream
Tssr87364 transcription start site region 87364 within coordinates
Tssr87365 transcription start site region 87365 75 bp upstream
Tssr87366 transcription start site region 87366 857 bp upstream
Tssr87367 transcription start site region 87367 874 bp upstream
Tssr87368 transcription start site region 87368 1430 bp upstream
Tssr87369 transcription start site region 87369 1455 bp upstream
Tssr87370 transcription start site region 87370 1488 bp upstream
Tssr87371 transcription start site region 87371 1527 bp upstream
Tssr87372 transcription start site region 87372 1583 bp upstream
Tssr87373 transcription start site region 87373 1613 bp upstream
Tssr87374 transcription start site region 87374 1654 bp upstream
Tssr87375 transcription start site region 87375 1672 bp upstream
Tssr87376 transcription start site region 87376 1694 bp upstream
Tssr87377 transcription start site region 87377 1702 bp upstream
Tssr87378 transcription start site region 87378 1752 bp upstream
Tssr87379 transcription start site region 87379 1802 bp upstream
Tssr91614 transcription start site region 91614 873 bp upstream
Tssr91615 transcription start site region 91615 839 bp upstream
Tssr91616 transcription start site region 91616 25 bp downstream
Tssr91617 transcription start site region 91617 40 bp downstream
Tssr91618 transcription start site region 91618 72 bp downstream
Tssr91619 transcription start site region 91619 1469 bp downstream
Tssr91620 transcription start site region 91620 1573 bp downstream
Tssr91621 transcription start site region 91621 1668 bp downstream
Tssr91622 transcription start site region 91622 1710 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
01/28/2026
MGI 6.24 		The Jackson Laboratory