rs244219297 SNP Detail

Summary

• ID
  rs244219297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127968565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGAAGC TGCGGGCACT
  TAGCCGAAGA CTGGGTTGGG ACGCAATGCC GCACGAGGGG CCGCTGAGGC ATCTCTCGCG
  GGCAAGGAGG GCGCGTGGTC TCGGCTTGGA GCCGAGGTCC CGCTTCGTGG TGCCGGTAGT
  GCGTCCAGCC GGGAAGCGTC GCGGCGACCC AGACGGCCCG GGAGAAGTAG CCGCGCGGTA
  R
  CGGCGGGCGG GTAGACTTAA CTCTTCGCTG ACGCGGGTTC ATTGCGGAGG TTTGAGTATT
  AAAATCACAC GCGCCCAGAC TTTGCTTGTA CCCATTCAAG TCAGTTTGGC CATAGTGGTC
  AATTTCCTTT CCGGATGTCC CTGGCGGCCC GGTTCCTTTT GCGACCGTCC TGTGGATATT
  GAGGAACACC GTATCTACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355609324	MGP_WTSI_2_127952381	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244219297					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355609324	MGP_WTSI_2_127952381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127968565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			Intron
				Noncoding-Transcript-Variant
Cpgi12235	CpG island 12235			within coordinates
Gm74510	predicted gene, 74510			within coordinates
Gm75592	predicted gene, 75592			482 bp upstream
Gm75596	predicted gene, 75596			1240 bp downstream
Rr397296	regulatory region 397296			688 bp upstream
Rr564651	regulatory region 564651			585 bp distal
Rr564652	regulatory region 564652			418 bp distal
Rr564653	regulatory region 564653			within coordinates
Rr564654	regulatory region 564654			1368 bp proximal
Rr564655	regulatory region 564655			1377 bp proximal
Tssr20042	transcription start site region 20042			589 bp downstream
Tssr20043	transcription start site region 20043			913 bp upstream
Tssr20044	transcription start site region 20044			942 bp upstream
Tssr20045	transcription start site region 20045			1466 bp upstream
Tssr20046	transcription start site region 20046			1480 bp upstream
Tssr26150	transcription start site region 26150			755 bp downstream
Tssr26151	transcription start site region 26151			1379 bp downstream