rs244208252 SNP Detail

Summary

• ID
  rs244208252
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117151091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGGTGGCT TTGCAGGGAG CCCTAGAGAG
  AAACCTTCCA CCAGAGCAGA GTCCGAGGAA CGCTGCAGGG CTTGTCCTGC AGGGGGCGCT
  CCTCGACAGA TGCCTTGTCC TGAGTCAACA CAAGATCCGG CAGAGGGAGG CTCCTTTATC
  T
  AGTTCAGTGC CAGGGTCGGG AAGCTTCCTT TAGAAGTGAT CCCTGAAGCT GTGCTCAGAG
  ACCCTTTCCT AGCCGTTCCT GCTCTCTGCT TGCCTCCAAA CGCATGCTTC ATCTGACTTC
  CGCTTCTCAC CTCTGTAGCC TGACGGACCA                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321921054	CHEV_6_117124148	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244208252					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117151091 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1462 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			58 bp distal
Rr637291	regulatory region 637291			7 bp distal
Tssr58395	transcription start site region 58395			625 bp downstream
Tssr58396	transcription start site region 58396			611 bp downstream
Tssr58397	transcription start site region 58397			576 bp downstream
Tssr58398	transcription start site region 58398			553 bp downstream
Tssr58399	transcription start site region 58399			524 bp downstream
Tssr58400	transcription start site region 58400			491 bp downstream
Tssr58401	transcription start site region 58401			457 bp downstream
Tssr58402	transcription start site region 58402			428 bp downstream
Tssr58403	transcription start site region 58403			410 bp downstream
Tssr58404	transcription start site region 58404			399 bp downstream
Tssr58405	transcription start site region 58405			343 bp downstream
Tssr58406	transcription start site region 58406			314 bp downstream
Tssr58407	transcription start site region 58407			292 bp downstream
Tssr58408	transcription start site region 58408			229 bp downstream
Tssr58409	transcription start site region 58409			201 bp downstream
Tssr58410	transcription start site region 58410			183 bp downstream
Tssr58411	transcription start site region 58411			152 bp downstream
Tssr58412	transcription start site region 58412			140 bp downstream
Tssr58413	transcription start site region 58413			116 bp downstream
Tssr58414	transcription start site region 58414			94 bp downstream
Tssr58415	transcription start site region 58415			76 bp downstream
Tssr58416	transcription start site region 58416			58 bp downstream
Tssr58417	transcription start site region 58417			4 bp downstream
Tssr58418	transcription start site region 58418			16 bp upstream
Tssr58419	transcription start site region 58419			35 bp upstream
Tssr58420	transcription start site region 58420			62 bp upstream
Tssr58421	transcription start site region 58421			81 bp upstream
Tssr58422	transcription start site region 58422			107 bp upstream
Tssr58423	transcription start site region 58423			115 bp upstream
Tssr58424	transcription start site region 58424			177 bp upstream
Tssr58425	transcription start site region 58425			222 bp upstream
Tssr58426	transcription start site region 58426			244 bp upstream
Tssr58427	transcription start site region 58427			271 bp upstream
Tssr58428	transcription start site region 58428			286 bp upstream
Tssr58429	transcription start site region 58429			351 bp upstream
Tssr58430	transcription start site region 58430			396 bp upstream
Tssr58431	transcription start site region 58431			492 bp upstream
Tssr58432	transcription start site region 58432			565 bp upstream
Tssr58433	transcription start site region 58433			601 bp upstream
Tssr58434	transcription start site region 58434			1039 bp upstream
Tssr62617	transcription start site region 62617			554 bp upstream
Tssr62618	transcription start site region 62618			531 bp upstream
Tssr62619	transcription start site region 62619			495 bp upstream
Tssr62620	transcription start site region 62620			462 bp upstream
Tssr62621	transcription start site region 62621			378 bp upstream
Tssr62622	transcription start site region 62622			145 bp downstream
Tssr62623	transcription start site region 62623			163 bp downstream
Tssr62624	transcription start site region 62624			278 bp downstream
Tssr62625	transcription start site region 62625			429 bp downstream
Tssr62626	transcription start site region 62626			525 bp downstream
Tssr62627	transcription start site region 62627			556 bp downstream
Tssr62628	transcription start site region 62628			691 bp downstream
Tssr62629	transcription start site region 62629			871 bp downstream