rs244182873 SNP Detail

Summary

• ID
  rs244182873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114701741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGGTCTT CCACCTTGCT TTTTATGTTT
  TAAAGTAAAT GTGCTTTTAG GTCTCAAACA TTTAAAGATC ATGTACATCG TGGGAATAAA
  GAGTCAGAAT AGTTCTCTCA AACCTATCAC CGTATGGGGA GGAACTTACA TTCACAGAAT
  Y
  GCCTGTGTCA GGACCCATAA TAACCATTTC TTCCTCCTTG TCACCCACAG ACATGCATCA
  TTATAGCTGT GTTTATCCCT GACCTAATGA GTAATTGTTC TGTTTGGTTT TAGATCCGGG
  GTTTTCTGTC ACGGTTCGAT AATGTTCTTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914671	CHEV_6_114674798	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244182873					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114701741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Rr379964	regulatory region 379964			within coordinates
Rr636820	regulatory region 636820			360 bp distal
Rr636821	regulatory region 636821			234 bp proximal
Rr636822	regulatory region 636822			1830 bp proximal