rs244170573 SNP Detail

Summary

• ID
  rs244170573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180085645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTTTTC ACTCCTTGTG
  ACCTGTCACC ATCATCATTG CAATCATTGC CACCATTATT ATCAACAGCA TCACCATCCT
  CACTATCACC ATCATCAGCA CACTTTGCCT GAAAAGAAAG AGCAGATCTC AGTTCAGTAG
  GAACAGACTT CAGCTCCCCA AGCTCATGGT CTGAATGTGC CCAGGAAGGA GAAACACCCT
  Y
  CCTCTCCCCC TCCTTACCAC AAGAGAGTTA AGAGAGTTAA GTTCAGGTCG TTTAGAAACA
  TGGTTAATGA AGTTTATAAG GGAAATGTTT ATGAACCCTT TTGGGGTTTT TCCATTTCCC
  TGATTTGTCA CGACCAGCTG TGAGTCACTG GTCACCAACA GCTAAGTTAA CCGGCTGGGG
  CAGCAGCTCC CCCTCTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320632135	CHEV_2_180178557	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244170573					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180085645 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	within coordinates
Rr572757	regulatory region 572757	1266 bp proximal
Tssr22237	transcription start site region 22237	1575 bp downstream
Tssr22238	transcription start site region 22238	788 bp downstream
Tssr22239	transcription start site region 22239	189 bp upstream
Tssr28110	transcription start site region 28110	18 bp upstream
Tssr28111	transcription start site region 28111	34 bp downstream