rs244147579 SNP Detail

Summary

• ID
  rs244147579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGGTCAC AACAATGAGA
  GGAATAAATG GTACTCTTTG AATCATTTAT CATCCTGGCC AACATTTCCA TCAGACGTAA
  GCTATTTTAT GTTTAACTGT CCTCACACGC TGGAACCCAG GTCATAGGAG CAAAAGAAAG
  ACATGGACAC AGGAGCACAT ATTCAGGAGA AGGTTCTCTG TGAGAGAGGA CGGGTGCCAC
  R
  CTTCTCAAGC AGCAGGCAGG GGAGTTCTTG AAGAAAGGGA CAATATTTTA CTTGTCAGTA
  AAAGAAACAC AAATCAACAG AAGCAAAAGC AATACTTTAT TGATTTAGTA AATAAGACAA
  TCTGAGTCTA GTCATGGAGC TTGAGTCACT ACCACATCAA GATTCTTGAA AAATGTCCTA
  GGAGACACCG TTCTTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368091136	MGP_WTSI_6_42535141	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244147579					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368091136	MGP_WTSI_6_42535141	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562076 () rs orientation: forward

Symbol	Name	Function Class
Gm38798	predicted gene, 38798	1589 bp upstream
Rr629347	regulatory region 629347	1335 bp distal
Rr629348	regulatory region 629348	1434 bp distal
Tssr56046	transcription start site region 56046	75 bp upstream
Tssr56047	transcription start site region 56047	208 bp upstream
Tssr56048	transcription start site region 56048	818 bp upstream
Tssr56049	transcription start site region 56049	868 bp upstream
Tssr60620	transcription start site region 60620	598 bp downstream
Tssr60621	transcription start site region 60621	616 bp downstream
Tssr60622	transcription start site region 60622	662 bp downstream
Tssr60623	transcription start site region 60623	718 bp downstream
Tssr60624	transcription start site region 60624	760 bp downstream
Tssr60625	transcription start site region 60625	828 bp downstream
Tssr60626	transcription start site region 60626	843 bp downstream
Tssr60627	transcription start site region 60627	859 bp downstream
Tssr60628	transcription start site region 60628	1003 bp downstream
Tssr60629	transcription start site region 60629	1058 bp downstream
Tssr60630	transcription start site region 60630	1127 bp downstream
Tssr60631	transcription start site region 60631	1171 bp downstream
Tssr60632	transcription start site region 60632	1223 bp downstream
Tssr60633	transcription start site region 60633	1249 bp downstream
Tssr60634	transcription start site region 60634	1262 bp downstream
Tssr60635	transcription start site region 60635	1328 bp downstream
Tssr60636	transcription start site region 60636	1433 bp downstream
Tssr60637	transcription start site region 60637	1689 bp downstream
Tssr60638	transcription start site region 60638	1729 bp downstream
Tssr60639	transcription start site region 60639	1780 bp downstream