rs244142332 SNP Detail

Summary

• ID
  rs244142332
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104545309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCAGTTA ACCTCGTGAA
  GCCCGGGGTT CCTTAGTTAC AAGATCTTCT TGGCACCTAA TACGGTTGTG AAGATCATAC
  AAGATAATTC TGGTACAGTG CTTACTTAGC ATGCAACTGT CCTAATCCCA CTAGCCATAA
  TCCCGACCCG TCCCCCAAAT CCAGTGTTCA TAAACTTCTG GCCTAAGAGC ATGCTCATAT
  M
  AGCGTTTCCA ACGTACACAC TCTCTGCCCC GGGGCCAGTT TCTCCTGACC GGCTTGTCCT
  TAAACTAAGC GTTCATCAAA TGCCACAGGT CAGGCTCTGT GACGAGATAC TTGCGTAAAA
  TCGCACATTA AACTTCCTAA CGCCTCCATA GTGGCTGATG TAGCGCAAGG AAACAGGCCC
  GGAGGGTTCC AGCAACTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359092811	MGP_WTSI_3_104441916	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244142332					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359092811	MGP_WTSI_3_104441916	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104545309 () rs orientation: forward

Symbol	Name	Function Class
Gm65697	predicted gene, 65697	within coordinates
Rr367518	regulatory region 367518	297 bp upstream
Rr582556	regulatory region 582556	within coordinates
Rr582557	regulatory region 582557	479 bp proximal
Rr582558	regulatory region 582558	574 bp proximal
Rr582559	regulatory region 582559	686 bp proximal
Rr582560	regulatory region 582560	1221 bp proximal
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	675 bp upstream
Tssr31045	transcription start site region 31045	665 bp upstream
Tssr34883	transcription start site region 34883	432 bp upstream
Tssr34884	transcription start site region 34884	436 bp downstream
Tssr34885	transcription start site region 34885	539 bp downstream