rs243964826 SNP Detail

Summary

• ID
  rs243964826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115216602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATGCAGT ACGCAGGCCT
  CCCCAGCATC AACTCTCTGG AGTCTATTTA CAACTTCTGT GACAAGCCGT GGGTGGTAAG
  CATGTCCCCA GAGTACCTCC AGCACTCCAA TAGTAGCACG GACTGAGAAG ATCCGAGAGG
  CTTGTCAGCT GGGAGTCTGG ATGGGGCAGG CCATCACAGT AGCGTATTAC CAGATGTCAT
  R
  GACTGTGTGA TTTTGCTGCA GAGCAGACCT TTGACTTTTC TACCATGCTG TGCAGAAATC
  CTGTGATGAA AACCCTTTAT GTATATAGGT CTTTCCTTGA TCAGGAGCTA CAGTTGTAAC
  ACTGCCTGCC TCTTAAAATG GGTAAACTAT TGGAAAGGCC TAACACCAGT AGAGAAATTC
  AACTCATGTT AGAGATAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321915624	CHEV_6_115189659	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243964826					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115216602 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			488 bp distal
Rr636940	regulatory region 636940			794 bp proximal
Rr636941	regulatory region 636941			1575 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			663 bp downstream