rs243960466 SNP Detail

Summary

• ID
  rs243960466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAACTT GTAAACGCGC
  TCAGGCAACC ATTGGACAAT TTGTCTAGAC TGCTCCTTGC CCACCTGAAC TGCCCTGTTC
  CTCCCCTTCT GGACTCCTGC CGTCTTCCTC CAGAGCTACC TTTAAGGTTG TCCCATGTAC
  TATCAAGGTG CTCTGTCAAA AGTTCTTAGG CTGCTTCTGG CACTCTCCAG AATTTTCCAA
  R
  ACCTCCCCCC CACCATGATA TCAGTCATCC GCGCCTTCTG GGTGGTTCTT CCTCCACACC
  CTTTGGGCAC TTTGACTCCT GTGGGATATT CGTCCTTCCT TTTCCTTTAG CTTTCCTCAC
  TTGCCAAGCT CCAACTTGGC CAGAAGCTCA AATGCCTCCA CTGTGGTCTC TTCTCTGTGT
  CCCCTGGGAG ACATCCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791570	MGP_WTSI_6_117123124	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243960466					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791570	MGP_WTSI_6_117123124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150067 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	438 bp distal
Rr637289	regulatory region 637289	760 bp proximal
Rr637290	regulatory region 637290	945 bp proximal
Rr637291	regulatory region 637291	996 bp proximal
Tssr58392	transcription start site region 58392	1619 bp downstream
Tssr58393	transcription start site region 58393	1600 bp downstream
Tssr58394	transcription start site region 58394	1560 bp downstream
Tssr58395	transcription start site region 58395	386 bp upstream
Tssr58396	transcription start site region 58396	402 bp upstream
Tssr58397	transcription start site region 58397	440 bp upstream
Tssr58398	transcription start site region 58398	466 bp upstream
Tssr58399	transcription start site region 58399	488 bp upstream
Tssr58400	transcription start site region 58400	516 bp upstream
Tssr58401	transcription start site region 58401	552 bp upstream
Tssr58402	transcription start site region 58402	583 bp upstream
Tssr58403	transcription start site region 58403	601 bp upstream
Tssr58404	transcription start site region 58404	620 bp upstream
Tssr58405	transcription start site region 58405	662 bp upstream
Tssr58406	transcription start site region 58406	692 bp upstream
Tssr58407	transcription start site region 58407	723 bp upstream
Tssr58408	transcription start site region 58408	790 bp upstream
Tssr58409	transcription start site region 58409	812 bp upstream
Tssr58410	transcription start site region 58410	834 bp upstream
Tssr58411	transcription start site region 58411	850 bp upstream
Tssr58412	transcription start site region 58412	877 bp upstream
Tssr58413	transcription start site region 58413	890 bp upstream
Tssr58414	transcription start site region 58414	923 bp upstream
Tssr58415	transcription start site region 58415	938 bp upstream
Tssr58416	transcription start site region 58416	953 bp upstream
Tssr58417	transcription start site region 58417	1007 bp upstream
Tssr58418	transcription start site region 58418	1040 bp upstream
Tssr58419	transcription start site region 58419	1059 bp upstream
Tssr58420	transcription start site region 58420	1086 bp upstream
Tssr58421	transcription start site region 58421	1105 bp upstream
Tssr58422	transcription start site region 58422	1131 bp upstream
Tssr58423	transcription start site region 58423	1139 bp upstream
Tssr58424	transcription start site region 58424	1201 bp upstream
Tssr58425	transcription start site region 58425	1246 bp upstream
Tssr58426	transcription start site region 58426	1268 bp upstream
Tssr58427	transcription start site region 58427	1295 bp upstream
Tssr58428	transcription start site region 58428	1310 bp upstream
Tssr58429	transcription start site region 58429	1375 bp upstream
Tssr58430	transcription start site region 58430	1420 bp upstream
Tssr58431	transcription start site region 58431	1516 bp upstream
Tssr58432	transcription start site region 58432	1589 bp upstream
Tssr58433	transcription start site region 58433	1625 bp upstream
Tssr62617	transcription start site region 62617	450 bp downstream
Tssr62618	transcription start site region 62618	472 bp downstream
Tssr62619	transcription start site region 62619	508 bp downstream
Tssr62620	transcription start site region 62620	551 bp downstream
Tssr62621	transcription start site region 62621	617 bp downstream
Tssr62622	transcription start site region 62622	1169 bp downstream
Tssr62623	transcription start site region 62623	1187 bp downstream
Tssr62624	transcription start site region 62624	1302 bp downstream
Tssr62625	transcription start site region 62625	1453 bp downstream
Tssr62626	transcription start site region 62626	1549 bp downstream
Tssr62627	transcription start site region 62627	1580 bp downstream
Tssr62628	transcription start site region 62628	1715 bp downstream
Tssr62629	transcription start site region 62629	1895 bp downstream