rs243930883 SNP Detail

Summary

• ID
  rs243930883
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141232256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTTCCA GGAGTCTGAA
  GGCCTCTTCT AGCCTCTAAG CAGACATGAA TACACGCTCA CGCATGCACC CACAAATTCA
  GGCAGGCCTA AGATATGCAG TGAGATTCTG TCAGGGAATG GGGGCGCCTA TACTGATTGG
  TAGTAGACTC CTGCTCAGGG GGGATTAAAT CTTAGCTCCC ATCTCCATCA TTTAAAAAAA
  W
  AAAAAAAAAA AAAAAAAGGA GGGGCTGGCG AGATGGCTCA GTGGTTAAGA GCGCCGACTG
  CTCTTCCGAA GGTCACGAGT TCAAATCCCA GCAACCACAT GGTGGCTCAC AACCATCTGT
  AACGAAATCT GATGCCCTCT TCTGGAGTGT CTGAAGACAG CTACAGTGTA CTTACATATA
  ATAAATAAAT CTAAAAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57L/J	CE/J	I/LnJ	LP/J	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363522476	MGP_WTSI_4_141060860	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	T	T	T	A	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57L/J	CE/J	I/LnJ	LP/J	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243930883					SNP	A	T	T	T	T	A	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363522476	MGP_WTSI_4_141060860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141232256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			148 bp distal
Rr603781	regulatory region 603781			987 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant