rs243907529 SNP Detail

Summary

• ID
  rs243907529
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:83475782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC AGGTTACAAC GATTGTCTAC
  K
  TGAGTTTCCT TAAGATAGGT AATGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320367676	CHEV_2_83485595	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243907529					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83475782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11854	CpG island 11854			169 bp distal
Rr397083	regulatory region 397083			862 bp downstream
Rr560160	regulatory region 560160			993 bp distal
Rr560161	regulatory region 560161			1194 bp distal
Rr560162	regulatory region 560162			1063 bp distal
Rr560163	regulatory region 560163			1011 bp distal
Rr560164	regulatory region 560164			28 bp distal
Rr560165	regulatory region 560165			736 bp distal
Tssr18640	transcription start site region 18640			948 bp downstream
Tssr18641	transcription start site region 18641			917 bp downstream
Tssr18642	transcription start site region 18642			891 bp downstream
Tssr18643	transcription start site region 18643			861 bp downstream
Tssr18644	transcription start site region 18644			846 bp downstream
Zc3h15	zinc finger CCCH-type containing 15			Intron
				Noncoding-Transcript-Variant