rs243875775 SNP Detail

Summary

• ID
  rs243875775
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148244618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC AGCTTTTAGT CCGGCTGCCC
  T
  ACAACGCTGG GTACTGGAAC TGCGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417738	CHEV_4_147534270	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243875775					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148244618 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			within coordinates
Fbxo2	F-box protein 2			mRNA-UTR
Fbxo44	F-box protein 44			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr398857	regulatory region 398857			within coordinates
Rr604608	regulatory region 604608			within coordinates
Rr604609	regulatory region 604609			471 bp proximal
Tssr40263	transcription start site region 40263			within coordinates
Tssr40264	transcription start site region 40264			452 bp upstream
Tssr40265	transcription start site region 40265			470 bp upstream
Tssr40266	transcription start site region 40266			495 bp upstream
Tssr44596	transcription start site region 44596			559 bp upstream
Tssr44597	transcription start site region 44597			342 bp upstream
Tssr44598	transcription start site region 44598			324 bp upstream
Tssr44599	transcription start site region 44599			231 bp upstream
Tssr44600	transcription start site region 44600			89 bp upstream