rs243842771 SNP Detail

Summary

• ID
  rs243842771
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131792205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGGGCA GGTAGGAAAC
  CCCCCCAAAC ACACTCTTCA GCCAGGAGAG GTAGGGATCA GAGCTTTTGC ATCTGCAGCT
  TGCCTTTGAG CCCTGCAAAA GTCAAAGCCT TGCCCAAGCC AGGTGTGGCG CTTCTGGCTA
  TTTGGGAGGG GGTTGCTGAA GCTGGGTCTG CAGGGGTACC AGGACTTGGG TGTTTTGCTG
  S
  TCGCTGGGAT GCTGGGTTAC AGCGGGAGGT TTAGAGTTCT GTCTCATCTT TGTGTTGAGA
  CATGAGTACT TTTAAAGATC TAGTGCGTTT CTTTGGCAAA GGGGCCAGAA TGGTCCTTCC
  ATCCAACAGG AGGCTGCAAT GGATGTGAAC AGGAGCTGAC ATAGCAAATG GGATGTGCTA
  GCCTTGATTC TAAGTGTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359754942	MGP_WTSI_3_131749408	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243842771					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359754942	MGP_WTSI_3_131749408	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131792205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13841	CpG island 13841	249 bp distal
Cpgi13842	CpG island 13842	522 bp proximal
Dkk2	dickkopf WNT signaling pathway inhibitor 2	Intron
Rr585412	regulatory region 585412	1142 bp distal
Rr585413	regulatory region 585413	within coordinates
Rr585414	regulatory region 585414	736 bp proximal
Rr585415	regulatory region 585415	1002 bp proximal
Tssr31747	transcription start site region 31747	1145 bp downstream
Tssr31748	transcription start site region 31748	989 bp downstream
Tssr31749	transcription start site region 31749	630 bp downstream