rs243834559 SNP Detail

Summary

• ID
  rs243834559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115676615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCCCTA CAGTGTTTTT
  TTTAGCCCCA AATCCATAAA CATCTGTGTC AAGATACTTC ACCCAGTCAG GATTTAAGGA
  TAGGGGATTT CCTTAGGGTC ATGTCTTTGT TGTGCATCTA TCCTGTTCCC ATTGGTAGGG
  TATTCAACTG TGCCAGAGGA TGTGCCTTGT CTACCATTCA TGTCTTAACT TGTCAGTCAG
  R
  ATGGTACTTG TCTAACATTC ATGTCTTAAT TTGCCAACCA GGATGTCAGT TACCCACGTA
  CATATCTCTT TCTGACAAGT AGGATGTCAG TTCCCAGGGA ACTTAAACTT TACTCAACCA
  CTACTCAAAA TGGAAGTCGT ATTCCAAATA GTTTCTTATT GTTAATTATC TCTTATGCTG
  GGGTCCATCC CAGGGGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916403	CHEV_6_115649672	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243834559					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115676615 () rs orientation: forward

Symbol	Name	Function Class
Gm38879	predicted gene, 38879	1876 bp upstream
Rr379973	regulatory region 379973	485 bp downstream
Rr637027	regulatory region 637027	1261 bp distal
Rr637028	regulatory region 637028	661 bp distal
Rr637029	regulatory region 637029	750 bp distal
Rr637030	regulatory region 637030	516 bp distal
Rr637031	regulatory region 637031	1182 bp proximal
Rr637032	regulatory region 637032	1834 bp proximal