rs243817132 SNP Detail

Summary

• ID
  rs243817132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101869266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGGCTG GTCTCCCAGA
  AGATAAAACA ACAGCTGAGC AATGGGCCAG TGTTTCTGGC TAAGGGTCCC CCTTCCCCCA
  ATTTTCTACA ATCCTACTCC CAATGATTCA TCCCCGTTCT GTGACTACAA GCTTGGCCAA
  GCCACCTTTC TTTTTTATTT TTTAAAGAAT TATTTATTTC TTTTATGTAT AATAGTACAC
  R
  GTAGCTATCT TCAGACACAC CAGCAGAGGG CATTGTAGAT GGTTGTGAGC CATCATGTGG
  TTGCTGGGAA TTGAACTCAG GACCTCTGGA AGAGCAGTCA GTTCTTTTAA CCACTGAGCC
  ATCTCTCGAG CCCCAGTTTT TCTTACTAGA AACAGAGTTA TTTCCTATTT CCACACCCCA
  CTAGGCTAGG GCTTGACCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320433833	CHEV_2_101879078	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243817132					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101869266 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	491 bp upstream
Rr561615	regulatory region 561615	1272 bp distal
Rr561616	regulatory region 561616	1866 bp distal
Rr561617	regulatory region 561617	16 bp proximal
Rr561618	regulatory region 561618	128 bp proximal
Rr561619	regulatory region 561619	719 bp proximal
Tssr19089	transcription start site region 19089	674 bp upstream
Tssr19090	transcription start site region 19090	695 bp upstream
Tssr19091	transcription start site region 19091	725 bp upstream