rs243808048 SNP Detail

Summary

• ID
  rs243808048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105172874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCTGTT TTGCTTGCTG
  GTTAGTCGGA TCCTGGGCAG GGGATATATA GACTTCAGTG GTAGAGCACT TGCTCAAAAT
  GTGCAAGGCT CTGAGTTCAA TCTGTATTAC TATAAGAAAG AAAAAGAAAA AATAGTCAGA
  TGTTGAAGAT ATCTGTAAAC ACGTGAGACG ATGCAATCTT TCTTAAGAAT TTTTATGTAG
  Y
  TTTTAAATGT ATAACTATCA TTTAGATTGA CATGTAATAG ATTAGTCATG TATAATTTAA
  TTAATATATA ATCTTTCTAA ATTATAATTT ATAATATAGT AAGCATTACT AGATACGACA
  CATTCTTTGG AATAATCAGG CTTTGTTTCA TTATGTTTTA AATTTATTAC ATGCATGTAC
  GTATGTATGT TTGTATGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321243575	CHEV_4_104988282	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243808048					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105172874 () rs orientation: forward

Symbol	Name	Function Class
Gm40217	predicted gene, 40217	within coordinates
Rr596594	regulatory region 596594	1985 bp distal
Rr596595	regulatory region 596595	239 bp distal
Rr596596	regulatory region 596596	908 bp proximal
Rr596597	regulatory region 596597	1382 bp proximal