rs243785138 SNP Detail

Summary

• ID
  rs243785138
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103627918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGCTCGG ACCGCTCCGA
  AGGTAAAAAG GACACCCAGG TACAGCGGCC TTCTTCCCCT TCGGCGCCTT TGATCCGGGA
  TGGCGCTCAC CGTGCGCGCG CGGAGCCGCT GGACGTCTGG AGTGGGCAGC CGAGGGGGGC
  AAGGGTGGTG CTGCGTTGAG AACAGAGACG TGCGCTCCGT GGGCGCAGGC CGCTTCGCCC
  K
  GTCCCCGCGG CTCTGAGCTG CTCCTAGTGG GACAAGAGCC GGCGCGGGAG GGACTTAGCC
  AGCCAGCGCT CTGCAACGAG GGGGGGCGGG AGCAATAGGG AGCGAGGGCC TTCAAGCCGG
  TGAGGCTGCC CGACTGGAAT GCCTGTCGAA AAAAGGTCAC CGGACCGCGC CTCCCGTCGG
  GCCGTGTCCT CGGCGCCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355099996	MGP_WTSI_2_103637730	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243785138					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355099996	MGP_WTSI_2_103637730	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103627918 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	mRNA-UTR
Cpgi11985	CpG island 11985	within coordinates
Gm75184	predicted gene, 75184	within coordinates
Gm75190	predicted gene, 75190	1404 bp downstream
Rr373619	regulatory region 373619	within coordinates
Rr561931	regulatory region 561931	1614 bp distal
Rr561932	regulatory region 561932	213 bp distal
Rr561933	regulatory region 561933	within coordinates
Rr561934	regulatory region 561934	66 bp proximal
Tssr586	transcription start site region 586	within coordinates
Tssr19172	transcription start site region 19172	1611 bp downstream
Tssr19173	transcription start site region 19173	1558 bp downstream
Tssr25500	transcription start site region 25500	595 bp upstream
Tssr25501	transcription start site region 25501	485 bp upstream
Tssr25502	transcription start site region 25502	19 bp downstream
Tssr25503	transcription start site region 25503	44 bp downstream