rs243756473 SNP Detail

Summary

• ID
  rs243756473
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58204872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGCCCT CCTAAAGAAG
  CAGTCAAAGA GGGCTTCCTA AACTCCTTAT TTAAAAGGCA CGAATGTGTG CTCCCCACAC
  AGCAGTTCTC AGCACTCAGT TGTCATGAGG CTGGAGATAG GGCTCAGTGG TTAAGAGCAC
  TGACTTTCTC AGGTATGGCT TGCCTGAAGT CCACTGCCAG CCCACCCCCA CCCCGACTTC
  M
  GCATGACAGC TCACAACTGC CTGTAACTGC AGTTCCAAGG GGAGCCAATA CTGTCATGCC
  ACAGGATACC ATGAATTAAT GTACATTTGA TCATATTCAA CAGCTGAAGA ATGCAGGCTG
  CAAAACCGTA GGTTAGCAAG TTTGTTGAAA TAACATATGA GTAACATACT GGACAACATT
  CAACTGTATA TCCGCTGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321137335	CHEV_4_58217744	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243756473					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58204872 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr592872	regulatory region 592872			1714 bp proximal
Rr592873	regulatory region 592873			1770 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1451 bp downstream
Tssr41871	transcription start site region 41871			1476 bp downstream
Tssr41872	transcription start site region 41872			1632 bp downstream
Tssr41873	transcription start site region 41873			1661 bp downstream
Tssr41874	transcription start site region 41874			1686 bp downstream
Tssr41875	transcription start site region 41875			1706 bp downstream
Tssr41876	transcription start site region 41876			1727 bp downstream
Tssr41877	transcription start site region 41877			1767 bp downstream
Tssr41878	transcription start site region 41878			1798 bp downstream
Tssr41879	transcription start site region 41879			1814 bp downstream
Tssr41880	transcription start site region 41880			1896 bp downstream