rs243744374 SNP Detail

Summary

• ID
  rs243744374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137336914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAACAGTG TTGAGTTTGC ATTCTCTCTT
  GTACACATTA GCAGTCGGAA GCCATTAATC ACATTGAGTT TATCCATCTA AAGACGTCCT
  GAGTGTTCAC TTAGTGTTGT ATTCTTAGTG TTGTATTAAG CACGGTGGCA GTTGCGCTGA
  Y
  GGTATTGGCC AGAGCAGCAC AGGTTGCAGT GCAATGCCAT GGCTACCAGT GGCTCACTAA
  ATGCACAAAA TAGACTGTGG TGTGGTCATC CAGGTGCTGT AGAGAAGAAT AATGCAGGGC
  AGGGCAGGGC TGGCTGCAGG CCTCTGTGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321365627	CHEV_4_137165518	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243744374					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137336914 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602660	regulatory region 602660			within coordinates
Tssr39763	transcription start site region 39763			1068 bp upstream
Usp48	ubiquitin specific peptidase 48			Intron
				Noncoding-Transcript-Variant