rs243716538 SNP Detail

Summary

• ID
  rs243716538
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:147018886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG GGCATTAAGA AGCACTTGTT
  G
  CTCTTGCAGA GTACCCAGAT TTGGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548148	CHEV_2_147002702	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243716538					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147018886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12376	CpG island 12376			1327 bp proximal
Cpgi12377	CpG island 12377			1676 bp proximal
Nkx2-2	NK2 homeobox 2			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr566759	regulatory region 566759			636 bp proximal
Rr566760	regulatory region 566760			908 bp proximal
Rr566761	regulatory region 566761			1302 bp proximal
Rr566762	regulatory region 566762			1990 bp proximal