rs243686606 SNP Detail

Summary

• ID
  rs243686606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138357693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTTGTT CGTTTTTTAT
  CTCTTGATCC CTTTCCAAGA GATGTGGGAG ACTCTCCTTT GCCTGGGCAG TCATCATCTG
  ACCCAACAGA GAGCTACAGT CTTATCACAT AACCAGACAA GGAAAGGAAC CACTTTTAGA
  CACCTGCCAA GAAATGACAA TTCACTGCTG TAGGTGTCCC CCCACCCCCG CACCCCCCCC
  Y
  CCCCCGGCAG AAACTGCACC TTAGGATGGA TGGCCGCCTG TCTGTTACTT ATAGATATTC
  TAATCAGAAC CTTCCATACC ACAGCAACTC GAGAGTGGTT AGCATTGGCT AATGAGTAGA
  GTTTATACAG CCAGTTTCGA GAAAGATACT GAATCGGAAA CTGAAAACCA GTAAAGAAAT
  GGTTGCTACT TGAGGATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J
ss359916029	MGP_WTSI_3_138314896	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J
rs243686606					SNP	C	T	T	T	T	T	T	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359916029	MGP_WTSI_3_138314896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138357693 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	273 bp distal
Rr586177	regulatory region 586177	within coordinates
Rr586178	regulatory region 586178	830 bp proximal
Rr586179	regulatory region 586179	1751 bp proximal