rs243627487 SNP Detail

Summary

• ID
  rs243627487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107223188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTATA
  CAGAGAAACC TTGTCTAGAA AAAAAAAAAC AACAACAACA ACAACAAAAA AGTTTTCTCT
  R
  TGACTTGGAA AGATTTCTTC TTGACAGGTT TATTCTTGAT CAACCAAGTA TAATCCCAGT
  TTGTCTTTTG GCTCAGGTGT GATTGGTATT AATGTAATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321247966	CHEV_4_107038596	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243627487					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107223188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14540	CpG island 14540	1606 bp proximal
Rr367664	regulatory region 367664	1596 bp upstream
Rr596979	regulatory region 596979	1308 bp proximal
Rr596980	regulatory region 596980	1377 bp proximal
Rr596981	regulatory region 596981	1804 bp proximal
Rr596982	regulatory region 596982	1849 bp proximal
Tssr38245	transcription start site region 38245	1738 bp upstream
Tssr38246	transcription start site region 38246	1766 bp upstream