rs243471555 SNP Detail

Summary

• ID
  rs243471555
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104967009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT CAGCCATGTT CGGCGCACGG
  S
  CTCCCCCTGC CGCGGGCTCT GAGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321242974	CHEV_4_104782417	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243471555					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104967009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14519	CpG island 14519	within coordinates
Gm36893	predicted gene, 36893	150 bp upstream
Prkaa2	protein kinase, AMP-activated, alpha 2 catalytic subunit	mRNA-UTR
Rr596533	regulatory region 596533	1010 bp distal
Rr596534	regulatory region 596534	within coordinates
Rr596535	regulatory region 596535	68 bp proximal
Rr596536	regulatory region 596536	120 bp proximal
Tssr42616	transcription start site region 42616	69 bp upstream
Tssr42617	transcription start site region 42617	within coordinates
Tssr42618	transcription start site region 42618	17 bp downstream
Tssr42619	transcription start site region 42619	260 bp downstream
Tssr42620	transcription start site region 42620	784 bp downstream