rs243370628 SNP Detail

Summary

• ID
  rs243370628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29693843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGTAATGA GAGAAAAGGA
  TGGTTTGAGA ATTCCACTGT TAGGTTATGA GGCTTTTAAA ACGAGCATTT AAAGTATTTG
  ATTGCTAAGC AGGGGTATTT ATTCTTCTCT TTCTGGTTGT TAGTACCTGT CATTTGTCAC
  TCTGATTTTA TTGTCTTGAT CCCTGAGGAT CAACCTTCTT TTCTATTCCC ACAGCGTTTA
  R
  CGAATTGCTC AACACACAAA GTGCGTACTT GTTGATTTTA ACGTACGTGT GTTTGCGTGC
  GTGCACAGCA ACTGGGCAGA GGACGTGGGT GTGGGATGCA GGAAACATTC CTTTTCCTCA
  TTCTTTTTCC CTTAAGCAGC TGCAGCCTGC AGGCTTTCCG TCTAGGCGGG CAGAAGCAGA
  ACCACTGACC CTTTAGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367818908	MGP_WTSI_6_29643844	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243370628					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367818908	MGP_WTSI_6_29643844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29693843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17240	CpG island 17240	within coordinates
Rr627610	regulatory region 627610	within coordinates
Rr627611	regulatory region 627611	433 bp proximal
Rr627612	regulatory region 627612	842 bp proximal
Rr627613	regulatory region 627613	890 bp proximal
Tspan33	tetraspanin 33	378 bp upstream
Tssr1798	transcription start site region 1798	407 bp upstream
Tssr55283	transcription start site region 55283	338 bp upstream
Tssr55284	transcription start site region 55284	360 bp upstream
Tssr55285	transcription start site region 55285	411 bp upstream