rs243368649 SNP Detail

Summary

• ID
  rs243368649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132780956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACACAGAG AAGTGAACAG
  AATAGAAATC TAGATGGTGG GCGTGTCCAC GATTATAAAC TGAAGACACT TAATTCTGGT
  AGATACGTAG ACTCAGCTGA TAATACCAAT CACTACTGAT CAAACTCAGG ATCCATGTGT
  GAACTGTATT CATTTCTCTG TGGTGCTGGG AGTGGAACCC GGGATCTTGT ATTCTAGCAA
  R
  TGCTATACCT TTGAGCCACA CTTGAGCCCT CCCACACGTA CAGTCTTAAG CATGCTGCTG
  CCCACACTGA CACACAGAGA TGCACACTGA CAGGCAGAGT AGCCCCAGCA ACCCACATAC
  AGATGTGTGT ATCTACACAG ATGACTGAGT CTCACCAATG CACATTCCCA AGTAACTAGA
  ACCTATAAGC TTCTGTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321338385	CHEV_4_132609560	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243368649					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132780956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ahdc1	AT hook, DNA binding motif, containing 1			Intron
				Noncoding-Transcript-Variant
Rr377217	regulatory region 377217			371 bp upstream
Rr601173	regulatory region 601173			1417 bp proximal
Tssr39445	transcription start site region 39445			1455 bp upstream