rs243359278 SNP Detail

Summary

• ID
  rs243359278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79793752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGCAGC TCGTAAACTG
  GTTTGTCTGC TCTCTGTGCG CCCCACGAGT GTGTAAACTT TGGAGTAGTC GGCGTCCCAG
  GACCAGACGG AACCTCCTGC TGGGCACTGC CTGTGCCATC TACCTGGGCT TTCTGGTGAG
  CCAGGTGGGC AGAGGTTCCT TTCAGCATGG GCAGGCGACT GACAGGGGAC CACCCAACGG
  Y
  CACGACATCT TCAAGGTACC CTTCTCTGAG ATTCCCCTGG ATGGTACCCT GGCCCCTCCA
  GAGTTGCAGG GCAATGGAAG CACTTTGCAG CCCAACGTGG TGTACATTAC TCTACGCTCC
  AAGCGCAGCA AGCCTGCGAA TATCCGTGGC ACGGTGAAAC CCAAGCGCAG GAAGAAGTAT
  GCGGTGGCAT CTGCAGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358593276	MGP_WTSI_3_79690367	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243359278					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593276	MGP_WTSI_3_79690367	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79793752 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13279	CpG island 13279			within coordinates
Gask1b	golgi associated kinase 1B			Coding-Synonymous
				Intron
Gm36569	predicted gene, 36569			within coordinates
Rr375226	regulatory region 375226			within coordinates
Rr578605	regulatory region 578605			1186 bp distal
Rr578606	regulatory region 578606			505 bp distal
Rr578607	regulatory region 578607			70 bp distal
Rr578608	regulatory region 578608			358 bp proximal
Rr578609	regulatory region 578609			407 bp proximal
Rr578610	regulatory region 578610			447 bp proximal
Rr578611	regulatory region 578611			1516 bp proximal
Tssr29596	transcription start site region 29596			1874 bp downstream
Tssr29597	transcription start site region 29597			1853 bp downstream
Tssr29598	transcription start site region 29598			1355 bp downstream
Tssr29599	transcription start site region 29599			1326 bp downstream
Tssr29600	transcription start site region 29600			1277 bp downstream
Tssr29601	transcription start site region 29601			1248 bp downstream
Tssr29602	transcription start site region 29602			443 bp downstream
Tssr29603	transcription start site region 29603			381 bp downstream
Tssr29604	transcription start site region 29604			324 bp downstream
Tssr29605	transcription start site region 29605			236 bp downstream
Tssr29606	transcription start site region 29606			218 bp downstream
Tssr29607	transcription start site region 29607			439 bp upstream
Tssr29608	transcription start site region 29608			457 bp upstream
Tssr33752	transcription start site region 33752			272 bp upstream
Tssr33753	transcription start site region 33753			207 bp upstream
Tssr33754	transcription start site region 33754			351 bp downstream